impact.core.AnalyteData.Biomass(**kwargs)¶Bases: impact.core.AnalyteData.TimeCourse
Attributes
data_vector |
|
gradient |
|
stage_indices |
|
time_vector |
|
trial_identifier |
|
unique_id |
Methods
add_timepoint(time_point) |
|
calculate() |
|
create_stage(stage_bounds) |
|
curve_fit_data() |
|
data_curve_fit(t) |
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find_death_phase(data_vector) |
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find_death_phase_static([use_filtered_data, …]) |
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generate_time_point_list() |
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serialize() |
analyte_name¶analyte_type¶calculations_uptodate¶curve_fit_data()¶discriminator¶fit_params¶fit_type = 'gompertz'¶gradient_points¶id¶parent¶parent_id¶specific_productivity_points¶stages¶time_points¶trial_identifier¶trial_identifier_id¶type¶impact.core.AnalyteData.EndPoint(runID, t, data)¶Bases: impact.core.AnalyteData.TimeCourse
This is a child of AnalyteData which does not calcualte any time-based data
Attributes
data_vector |
|
gradient |
|
stage_indices |
|
time_vector |
|
trial_identifier |
|
unique_id |
Methods
add_timepoint(time_point) |
|
calculate() |
|
create_stage(stage_bounds) |
|
curve_fit_data() |
|
data_curve_fit(t) |
|
find_death_phase(data_vector) |
|
find_death_phase_static([use_filtered_data, …]) |
|
generate_time_point_list() |
|
serialize() |
add_timepoint(time_point)¶analyte_name¶analyte_type¶calculations_uptodate¶discriminator¶fit_params¶gradient_points¶id¶parent¶parent_id¶specific_productivity_points¶stages¶time_points¶trial_identifier_id¶type¶impact.core.AnalyteData.FitParameter(name, value)¶Bases: sqlalchemy.ext.declarative.api.Base
id¶parameter_name¶parameter_value¶parent_id¶impact.core.AnalyteData.GradientTimePoint(trial_identifier=None, time=None, data=None)¶Bases: impact.core.AnalyteData.TimePoint
Methods
get_unique_timepoint_id() |
data¶id¶parent¶parent_id¶time¶time_point_type¶trial_identifier¶trial_identifier_id¶use_in_analysis¶impact.core.AnalyteData.Product(**kwargs)¶Bases: impact.core.AnalyteData.TimeCourse
Attributes
data_vector |
|
gradient |
|
stage_indices |
|
time_vector |
|
trial_identifier |
|
unique_id |
Methods
add_timepoint(time_point) |
|
calculate() |
|
create_stage(stage_bounds) |
|
curve_fit_data() |
|
data_curve_fit(t) |
|
find_death_phase(data_vector) |
|
find_death_phase_static([use_filtered_data, …]) |
|
generate_time_point_list() |
|
serialize() |
analyte_name¶analyte_type¶calculations_uptodate¶curve_fit_data()¶discriminator¶fit_params¶fit_type = 'productionEquation_generalized_logistic'¶gradient_points¶id¶parent¶parent_id¶specific_productivity_points¶stages¶time_points¶trial_identifier_id¶type¶impact.core.AnalyteData.Reporter(**kwargs)¶Bases: impact.core.AnalyteData.TimeCourse
Attributes
data_vector |
|
gradient |
|
stage_indices |
|
time_vector |
|
trial_identifier |
|
unique_id |
| fit_type |
Methods
add_timepoint(time_point) |
|
calculate() |
|
create_stage(stage_bounds) |
|
curve_fit_data() |
|
data_curve_fit(t) |
|
find_death_phase(data_vector) |
|
find_death_phase_static([use_filtered_data, …]) |
|
generate_time_point_list() |
|
serialize() |
analyte_name¶analyte_type¶calculations_uptodate¶curve_fit_data()¶discriminator¶fit_params¶fit_type = None¶gradient_points¶id¶parent¶parent_id¶specific_productivity_points¶stages¶time_points¶trial_identifier_id¶type¶impact.core.AnalyteData.SpecificProductivityTimePoint(trial_identifier=None, time=None, data=None)¶Bases: impact.core.AnalyteData.TimePoint
Methods
get_unique_timepoint_id() |
data¶id¶parent¶parent_id¶time¶time_point_type¶trial_identifier¶trial_identifier_id¶use_in_analysis¶impact.core.AnalyteData.Substrate(*args, **kwargs)¶Bases: impact.core.AnalyteData.TimeCourse
Attributes
data_vector |
|
gradient |
|
stage_indices |
|
time_vector |
|
trial_identifier |
|
unique_id |
| fit_type |
Methods
add_timepoint(time_point) |
|
calculate() |
|
create_stage(stage_bounds) |
|
curve_fit_data() |
|
data_curve_fit(t) |
|
find_death_phase(data_vector) |
|
find_death_phase_static([use_filtered_data, …]) |
|
generate_time_point_list() |
|
serialize() |
analyte_name¶analyte_type¶calculations_uptodate¶curve_fit_data()¶discriminator¶fit_params¶fit_type = None¶gradient_points¶id¶parent¶parent_id¶specific_productivity_points¶stages¶time_points¶trial_identifier_id¶type¶impact.core.AnalyteData.TimeCourse(**kwargs)¶Bases: sqlalchemy.ext.declarative.api.Base
Child of AnalyteData which contains curve fitting relevant to time course data
Attributes
data_vector |
|
gradient |
|
stage_indices |
|
time_vector |
|
trial_identifier |
|
unique_id |
Methods
add_timepoint(time_point) |
|
calculate() |
|
create_stage(stage_bounds) |
|
curve_fit_data() |
|
data_curve_fit(t) |
|
find_death_phase(data_vector) |
|
find_death_phase_static([use_filtered_data, …]) |
|
generate_time_point_list() |
|
serialize() |
add_timepoint(time_point)¶analyte_name¶analyte_type¶calculate()¶calculations_uptodate¶create_stage(stage_bounds)¶curve_fit_data()¶data_curve_fit(t)¶data_vector¶discriminator¶find_death_phase(data_vector)¶find_death_phase_static(use_filtered_data=False, verbose=False, hyper_parameter=1)¶fit_params¶generate_time_point_list()¶gradient¶gradient_points¶id¶parent¶parent_id¶serialize()¶specific_productivity_points¶stage_indices¶stages¶time_points¶time_vector¶trial_identifier¶trial_identifier_id¶type¶unique_id¶impact.core.AnalyteData.TimeCourseStage(parent, *args, **kwargs)¶Bases: impact.core.AnalyteData.TimeCourse
Attributes
data_vector |
|
gradient |
|
stage_indices |
|
time_vector |
|
trial_identifier |
|
unique_id |
Methods
add_timepoint(time_point) |
|
calculate() |
|
create_stage(stage_bounds) |
|
curve_fit_data() |
|
data_curve_fit(t) |
|
find_death_phase(data_vector) |
|
find_death_phase_static([use_filtered_data, …]) |
|
generate_time_point_list() |
|
serialize() |
analyte_name¶analyte_type¶calculations_uptodate¶discriminator¶fit_params¶gradient_points¶id¶parent¶parent_id¶specific_productivity_points¶stage_parent¶stage_parent_id¶stages¶time_points¶trial_identifier_id¶type¶