impact.core.ReplicateTrial.ReplicateTrial(**kwargs)¶Bases: sqlalchemy.ext.declarative.api.Base
This object stores SingleTrial objects and calculates statistics on these replicates for each of the titers which are stored within it
Attributes
single_trials |
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unique_id |
Methods
add_replicate(single_trial) |
Add a SingleTrial object to this list of replicates |
calculate() |
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calculate_statistics() |
Calculates the statistics on the SingleTrial objects |
check_replicate_unique_id_match() |
Ensures that the uniqueIDs match for all te replicate_id experiments |
create_stage(stage_bounds) |
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get_analytes() |
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get_normalized_data(normalize_to) |
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get_unique_analytes() |
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link_identifiers(trial_identifier[, attrs]) |
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prune_bad_replicates(analyte) |
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set_blank(replicate_trial) |
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substract_blank() |
add_replicate(single_trial)¶Add a SingleTrial object to this list of replicates
| Parameters: | single_trial :
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avg¶avg_id¶bad_replicates¶blank¶blank_id¶calculate()¶calculate_statistics()¶Calculates the statistics on the SingleTrial objects
check_replicate_unique_id_match()¶Ensures that the uniqueIDs match for all te replicate_id experiments
create_stage(stage_bounds)¶get_analytes()¶get_normalized_data(normalize_to)¶get_unique_analytes()¶id¶link_identifiers(trial_identifier, attrs=['strain', 'media', 'environment'])¶parent¶parent_id¶prune_bad_replicates(analyte)¶replicate_ids¶set_blank(replicate_trial)¶single_trial_dict¶single_trials¶stage_parent_id¶stages¶std¶std_id¶substract_blank()¶trial_identifier¶trial_identifier_id¶unique_id¶